Sunday, December 13, 2015

Simulations and Data Analysis Scripts

1. Two-photo image motion correction (Ozden et al, PLoS ONE 2012 ) 

video

2. Identification of individual Purkinje cell dendrites and their spiking activity in two-photo movies.

a. Correlation-based identification (Ozden et al, Journal of Neurophysiology. 2008)



b. Identification with Independent Component Analysis (Ozden et al, PLoS ONE 2012



3. Meta-k means clustering algorithm (Ozden et alJournal of Neurophysiology. 2008




4. Simulating light transport in brain tissue with Monte Carlo methods  (Ozden et al, Journal of Neuroscience Methods, 2013)




5. Simulating optically induced heat generation in brain tissue (Ozden et al, Journal of Neuroscience Methods, 2013)

6. Simulating of recording profile of electrodes with finite element method (Ozden et al, Journal of Neuroscience Methods, 2013)